Identification of the accessible chromatin regions in six tissues in the soybean
| 论文作者 | Mingkun Huang, Ling Zhang , Limeng Zhou , Wai-Shing Yung , Zhili Wang , Zhixia Xiao ,Qianwen Wang , Xin Wang , Man-Wah Li , Hon-Ming Lam* |
| 刊物 | Genomics |
| 标识符 | 10.1016/j.ygeno.2022.110364 |
| 摘要 | Accessible chromatin regions (ACRs) are tightly associated with gene expressions in the genome. Conserved noncoding cis-regulatory elements, such as transcription factor binding motifs, are usually found in ACRs, indicating an essential regulatory role of ACRs in the plant genome architecture. However, there have been few studies on soybean ACRs, especially those focusing on specific tissues. Hence, in this study, with the convenient ATAC-seq,we identified the ACRs in six soybean tissues, including root, leaf bud, flower, flower bud, developing seed, and pod. In total, the ACRs occupied about 3.3% of the entire soybean genome. By integrating the results from RNAseq and transcription factor (TF) ChIP-seq, ACRs were found to be tightly associated with gene expressions and TF binding capacities in soybean. Together, these data provide a comprehensive understanding of the genomic features of ACRs in soybean. As a collection of essential genomic resources, these processed data are made available at datahub.wildsoydb.org. |
Identification of the accessible chromatin regions in six tissues in the soybean.pdf
